| Station | Subway Transfers |
| Queens |
| Jamaica-179th Street Subway Station | |
| 169th Street Subway Station | |
| Parsons Boulevard Subway Station | |
| Sutphin Boulevard Subway Station | |
| Briarwood-Van Wyck Boulevard Subway Station | |
| Kew Gardens-Union Turnpike Subway Station | |
| 75th Avenue Subway Station | |
| Forest Hills-71st Avenue Street Subway Station | |
| Jackson Heights-Roosevelt Avenue Subway Station | |
| 21st Street-Queensbridge Subway Station | |
| Manhattan |
| Roosevelt Island Subway Station | |
| Lexington Avenue-63rd Street Subway Station | |
| 57th Street Subway Station | |
| 47th-50th Streets-Rockefeller Center Subway Station | |
| 42nd Street-Bryant Park Subway Station | |
| 34th Street-Herald Square Subway Station | |
| 23rd Street Subway Station | |
| 14th Street Subway Station | |
| West Fourth Street-Washington Square Subway Station | |
| Broadway-Lafayette Street Subway Station | |
| Second Avenue Subway Station | |
| Delancey Street Subway Station | |
| East Broadway Subway Station | |
| Brooklyn |
| York Street Subway Station | |
| Jay Street-Metro Tech Subway Station | |
| Bergen Street Subway Station | |
| Carroll Street Subway Station | |
| Smith-Ninth Street Subway Station | |
| Fourth Avenue Subway Station | |
| Seventh Avenue Subway Station | |
| 15th Street-Prospect Park Subway Station | |
| Fort Hamilton Parkway Subway Station | |
| Church Avenue Subway Station | |
| Ditmas Avenue Subway Station | |
| 18th Avenue Subway Station | |
| Bay Parkway Subway Station | |
| Avenue N Subway Station | |
| Avenue P Subway Station | |
| Kings Highway Subway Station | |
| Avenue U Subway Station | |
| Avenue X Subway Station | |
| Neptune Avenue Subway Station | |
| West Eighth Street-New York Aquarium Subway Station | |
| Coney Island-Stillwell Avenue Subway Station | |